FastQCFastQC Report
Wed 31 May 2023
EGAF00007941127

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941127
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451896
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15620.345654752420911No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC14350.31755094092446046No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11840.2620071874944677No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC7970.17636801387929965No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT7740.1712783472303362No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7700.17039318781312515No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6470.14317453573388567No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5370.11883265176058208No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5270.11661975321755448No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGATC5020.11108750685998549No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4960.10975976773416893No Hit
GAACCGATCTACGCTACCATCGACGACCTGGGT4750.10511268079381098No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC4700.10400623152229717No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG4690.1037849416679944No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGGTG4670.1033423619593889No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC4550.10068688370775576No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG4530.10024430399915026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)