FastQCFastQC Report
Sun 21 May 2023
EGAF00007941128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466506
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC13810.2960304904974427No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10660.22850724320801877No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9440.2023553823530673No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7340.157339884160118No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6910.1481224250063236No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5720.12261364269698567No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG4970.10653667905664665No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA4670.10010589360051105No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)