FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941129

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941129
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466506
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT26430.5665521986855475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21380.4583006435072646No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10510.22529185047995096No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10370.22229081726708766No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8950.19185176610804577No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7590.16269887204023098No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7290.15626808658409538No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC4870.10439308390460145No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG4870.10439308390460145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)