FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462386
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG10360.22405522658558003No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9840.21280921135155476No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9130.19745407516663566No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8340.18036878279186652No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7710.16674380279679749No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7420.1604719866085911No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6780.1466307370897908No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6780.1466307370897908No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6710.145116850423672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)