FastQCFastQC Report
Wed 31 May 2023
EGAF00007941134

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941134
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473734
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13430.2834924240185421No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC12710.26829402153951376No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7120.15029531340372443No Hit
CGGGACGCGCAGACCGGAAACGGAGTCGCGTACCCAGTATA6100.128764243225101No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5580.11778761921246944No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5500.11609890782591074No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5500.11609890782591074No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4850.10237812781012129No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)