FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469446
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC32900.7008260801029298No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC29500.628400284590773No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT22850.4867439492508191No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG15860.33784503435964947No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15810.33677994913152953No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG15570.33166754003655374No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA15200.32378590934846607No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG15040.32037763661848223No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA14840.3161172957060024No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13810.2941765400067313No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGC9720.20705256834651908No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9080.19341947742658366No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGG8560.18234259105413617No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG7120.15166813648428148No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6760.1439995228418178No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC6130.1305794489675064No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6010.1280232444200185No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5610.11950256259505886No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5200.11076886372447522No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC5180.11034282963322725No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTG5050.10757360804011537No Hit
TGCCAGTTCTTTACGACAACCGCCGTCGTGACGTTTGTCCA4950.10544343758387546No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4940.10523042053825148No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4940.10523042053825148No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA4900.10437835235575552No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG4850.10331326712763554No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC4830.10288723303638757No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG4800.1022481818995156No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4740.10097007962577165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)