FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469446
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT65801.4016521602058596No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG36750.7828376426681664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC32130.6844237675898825No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT28890.6154062448077096No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21530.4586256992284522No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC16800.3578686366483046No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG14870.31675634684287435No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA14790.31505221047788246No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCGAA9940.2117389433502469No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9030.19235439219846373No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCAGC8570.18255560809976015No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6970.14847288079992163No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6940.14783382966304964No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA6750.14378650579619381No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6530.13910013079246603No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6330.13483978987998618No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6100.1299403978306344No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5970.12717117623752253No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5680.12099368191442678No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5610.11950256259505886No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5360.1141771364544591No Hit
AACTACCCGCGTGATTCTAAAACCATTATCAAA5340.11375110236321112No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT5330.11353808531758712No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5050.10757360804011537No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5050.10757360804011537No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG4990.10629550576637142No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA4880.10395231826450751No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4710.10033102848889969No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)