FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493259
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15910.32254860022827764No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC12660.25666029408485197No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12580.25503842808747534No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC8950.1814462584565107No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG8790.1782025264617574No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8220.16664673123044893No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6890.13968320902406242No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6370.1291410800411143No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6350.12873561354177016No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5930.12022081705554283No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5730.11616615206210125No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5560.1127196868176759No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5090.1031912240830882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)