FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476108
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11610.2438522352071379No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC8010.16823913901887808No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7170.15059608324161744No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT6650.13967419156997993No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5740.12056088114461425No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5460.11467986255219403No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGAAA4810.10102749796264714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)