FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493034
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG28130.5705488870950076No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT22960.4656879647245423No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT20490.41558999987830453No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT20340.41254761334918083No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT19750.400580893001294No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT19750.400580893001294No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT13820.28030521221660165No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT13750.2788854318363439No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT13520.2742204391583542No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGG13340.2705695753234057No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11190.2269620350726319No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT10070.20424554898850789No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT9700.19674099555000266No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT9200.18659970711959012No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT8400.17037364563093013No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG7750.15718997067139384No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT7200.1460345533979401No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT6880.1395441288024761No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6670.13528478766170285No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC6320.12818588576041406No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6070.12311524154520785No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTT5730.11621916541252734No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT5580.11317677888340358No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5500.11155417273453758No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGT5030.10202136160994983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)