FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493034
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT36380.737880146196814No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC22930.4650794874187176No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT22450.4553438505255216No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC22010.4464195167067585No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG21140.4287736748378408No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC20150.40869392374562397No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC14840.3009934406146432No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT14840.3009934406146432No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT14130.28659281104345746No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG14000.28395607605155015No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT11240.22797616391567313No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC10750.2180377012538689No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA10400.21093879935258014No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA9980.20242011707103363No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC9090.18436862366489937No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA8640.17524146407752814No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA8370.16976516832510538No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT7970.16165213758077537No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA7680.1557701902911361No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG7080.1436006441746411No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6720.1362989165047441No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT6500.1318367495953626No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC5750.11662481694974383No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5720.11601633964391908No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG5620.11398808195783657No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA5550.11256830157757884No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5410.10972874081706332No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5200.10546939967629007No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5160.10465809660185707No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5010.10161571007273332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)