FastQCFastQC Report
Sun 21 May 2023
EGAF00007941144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471925
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC14420.30555702706997934No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11590.2455898712719182No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11590.2455898712719182No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11280.23902103088414475No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11180.23690205011389523No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10140.2148646501033003No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8530.1807490597022832No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6980.1479048577634158No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6210.13158870583249457No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5370.11378926736239868No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT5150.10912750966784977No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT4960.10510144620437571No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG4890.10361815966520103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)