FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471925
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG26340.5581395348837209No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT24950.5286857021772527No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22560.4780420617682895No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC14420.30555702706997934No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12380.2623298193568893No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11530.24431848280976853No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11290.23923292896116968No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7130.15108332891879006No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC5380.11400116543942362No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG5260.11145838851512421No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5030.10658473274355036No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG4990.10573714043545054No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)