FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941146

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941146
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447152
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA11960.2674705692918739No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG9270.20731205496117652No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9190.20552295416323757No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7520.16817547500626184No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG7410.1657154614090958No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6940.15520449422120444No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6910.15453358142197732No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6270.14022077503846567No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5560.12434250545675743No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5120.11450245106809318No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGG4720.1055569470783984No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4660.10421512147994418No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4480.10018964468458152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)