FastQCFastQC Report
Sun 21 May 2023
EGAF00007941147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447152
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21240.47500626185279277No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13050.29184706766379215No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12090.2703778580885247No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA11370.2542759509070741No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9680.21648119655061365No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7540.1686227502057466No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7420.16593909900883816No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG7160.16012452141553657No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7150.15990088381579418No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6210.13887894944001145No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6200.13865531184026908No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4890.10935878627401868No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4680.10466239667942892No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC4640.10376784628045943No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTCTG4590.10264965828174759No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4540.10153147028303575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)