FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449250
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16050.3572621035058431No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7120.15848636616583195No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT5930.13199777406789093No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGCGT5630.1253199777406789No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC5470.12175848636616583No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5460.12153589315525876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)