FastQCFastQC Report
Wed 31 May 2023
EGAF00007941152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476100
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10930.22957361898760764No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10750.2257929006511237No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7410.15563957151858854No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6220.1306448225162781No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5830.12245326612056291No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5800.12182314639781558No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5220.10964083175803402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)