FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471119
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16800.356597802253783No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG16310.34619703302138105No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT15280.3243341915736788No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG14440.3065043014609897No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14010.2973770958080655No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT13580.2882498901551413No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT11260.23900543174866645No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT10960.23263761385127749No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCA10730.22775562012994593No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT10560.22414718998809216No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC10120.21480772373858836No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT10090.21417094194884945No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT10030.21289737836937164No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG9980.21183607538647348No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9610.20398243331302707No Hit
TTTAACAGTAATACCGTTGCCATTGGTGTCTTTGGTAACGC8400.1782989011268915No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8400.1782989011268915No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA8390.1780866405303119No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8120.1723556044226618No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT7920.16811039249106915No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC7650.16237935638341905No Hit
ATTACCGTTGTCGAAGGTCACGTTAGTACCGGAAGTTACCG6320.1341486970383279No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6190.1313893092827927No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6090.12926670331699636No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGT5790.12289888541960736No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC5740.1218375824367092No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5720.12141306124354993No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5710.1212008006469703No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5610.11907819468117396No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAA5490.11653106752221838No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5290.11228585559062572No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGG4890.10379543172744042No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4800.10188508635822371No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)