FastQCFastQC Report
Sun 21 May 2023
EGAF00007941155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471119
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT24790.5261940189209096No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21260.45126602832829926No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19410.41199781796106716No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG16950.3597817112024775No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT15790.3351594819992401No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG14950.31732959188655097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14130.2999242229670211No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC13790.29270736268331354No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA12280.260656012599789No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC11490.24388742546999803No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG11350.24091577711788317No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC11140.2364583045897109No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGGCA10870.23072726848206077No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10680.22669431714704777No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT10650.22605753535730888No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT10540.2237226687949329No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA10420.22117554163597733No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC9330.19803913660879735No Hit
GGTCTGGTTACTGCTAAAGCTGTCATCGATGCA8650.18360541604138234No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT7140.15155406595785778No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6950.14752111462284476No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6800.14433720567415026No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6320.1341486970383279No Hit
GAAGCAGGTGGCACCAACACCACCCCGGCGACC6320.1341486970383279No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGGAT5970.12671957615804075No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5890.1250214913854037No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGGTA5750.12204984303328882No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5680.1205640188572314No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5380.11419620095984241No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC5160.1095264678350905No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5160.1095264678350905No Hit
ATCGATGAAGACAACCCGACCGATAACGGCAAA5010.106342558886396No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4930.10464447411375893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)