FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475470
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12710.26731444675794475No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11770.24754453488127537No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11430.24039371569184176No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8760.1842387532336425No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8190.1722506151807685No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC6940.14596083874902727No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6760.14217511094285654No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6590.13859970134813973No Hit
ATAACAGTCCAGGTTGTCACCGTAAGAAACGCCCAGCAGAT6100.12829410898689717No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)