FastQCFastQC Report
Wed 31 May 2023
EGAF00007941159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475470
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29230.6147601320798368No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23940.503501798220708No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12410.2610049004143269No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA10070.21179043893410732No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8430.1772982522556628No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC6880.1446989294803037No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6840.143857656634488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6350.13355206427324542No Hit
GCAGCGGGTCGCCTGCCGGGCTATGGCGTCACC5840.12282583548909501No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5580.11735756199129284No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5130.10789324247586597No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5090.10705196963005027No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA4810.10116305970934024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)