FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434880
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7120.16372332597498163No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6240.1434878587196468No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5670.13038079470198677No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5270.12118285504047092No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4890.1124448123620309No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG4770.10968543046357616No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4450.10232707873436352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)