FastQCFastQC Report
Sun 21 May 2023
EGAF00007941162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493294
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC34840.7062725271339202No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC33100.6709994445503087No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT30910.6266040130226599No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA21780.44152168889141163No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG16400.33245893929380854No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15520.3146196791365798No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG8230.16683762624317344No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC8170.1656213130506351No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG7940.16095877914590487No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA7750.15710712070286686No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA7680.15568808864490546No Hit
AACACCGCGTTCGGAGCCATCGATCATAACGAAAATTTTAC6520.1321727002558312No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCA6480.131361824794139No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5710.11575247215656383No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5300.10744099867421861No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC5050.10237302703864228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)