FastQCFastQC Report
Sun 21 May 2023
EGAF00007941164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514573
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11420.22193158210788363No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA10390.20191498582319709No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC9310.18092671010721512No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG8500.16518550332022863No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8500.16518550332022863No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8350.16227046502634224No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8240.1601327702774922No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7360.14303121228669205No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG7110.13817281513021476No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7100.13797847924395568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)