FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514573
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT21630.4203485219784171No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17920.34824990817629375No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11100.21571283374759265No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC10650.2069677188659335No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA10090.19608490923542435No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC9150.17781733592706964No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC8460.16440815977519224No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8430.16382515211641496No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG7020.13642379215388292No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6420.1247636389783374No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)