FastQCFastQC Report
Wed 31 May 2023
EGAF00007941167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459523
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG28940.6297834928828372No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA24730.5381667511745876No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCTGG21630.47070549243454624No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC17850.3884462801644314No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG16520.35950322399531687No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGCGT15250.3318658696082677No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG13580.2955238366741164No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC13380.29117149740056536No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT13300.28943056169114495No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11910.25918180373996513No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11830.2574408680305447No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10480.22806257793407514No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG8560.18628012090798501No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGGTA7660.16669459417700527No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6880.14972047101015618No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6520.1418862603177643No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6480.14101579246305407No Hit
CGCAACTACACTCCGACCCCGCCACCGGTGTCC6330.1377515380078908No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6150.13383443266169484No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5560.12099503180471924No Hit
GGTGCGCACAAACGTGGCCGCACCGGCCGCACC5430.11816601127691106No Hit
TGGCGCCCTGCCCCGTGGACCCCGAACCCGCCG5410.11773077734955595No Hit
TCCACCATGTCCCTGGGCCGTGGTTACGGCTGG5400.1175131603858784No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5370.11686030949484573No Hit
CCTCAGAAAGCTACTCCGGGTCCGGTAGCGGAA5320.11577222467645798No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5310.11555460771278042No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4900.10663231220200077No Hit
CTGAAATACCAGGAATTTTTCTGGGACGCCAAC4870.10597946131096811No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT4860.10576184434729055No Hit
GCTTGGGCGCTGAAAAACCCGCACCTGGCATAC4770.10380329167419258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)