FastQCFastQC Report
Sun 21 May 2023
EGAF00007941170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468676
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA12290.26222806373699525No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11250.24003789398219666No Hit
GCGGACGCGACGCTCTTTAGTAGCGGTACCTGCAAAGCCCA9840.2099531446030947No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5090.10860381158838942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)