FastQCFastQC Report
Wed 31 May 2023
EGAF00007941172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478010
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG11470.23995313905566829No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11140.2330495177925148No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10110.21150185142570238No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9950.20815464111629461No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9740.203761427585197No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8450.17677454446559696No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8260.17279973222317527No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8200.17154452835714734No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG7740.16192129871760005No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7440.15564527938746053No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG6690.1399552310621117No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6330.13242400786594422No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA6110.12782159369050858No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5980.12510198531411476No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTT5720.11966276856132717No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5390.11275914729817367No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5350.11192234472082174No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5030.10522792410200624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)