FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478010
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT14300.2991569214033179No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC12670.2650572163762265No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG12410.25961799962343884No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12390.25919959833476286No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT11770.24622915838580783No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10210.21359385786908222No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9950.20815464111629461No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8930.18681617539382023No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8500.1778205476872869No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA7980.16694211418171168No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7690.16087529549591015No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG7530.15752808518650238No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6340.1326332085102822No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTTCC6060.12677559046881864No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5950.12447438338110081No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5860.12259157758205896No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5580.11673395954059539No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5180.10836593376707601No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5150.10773833183406205No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)