FastQCFastQC Report
Wed 31 May 2023
EGAF00007941174

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941174
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439795
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG21230.4827249059220774No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT18340.41701247171977857No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT18240.41473868506917994No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18220.41428392773906025No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG16880.38381518662103936No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT15250.3467524642162826No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT13470.306279061835628No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT13110.2980934298934731No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT12850.2921815846019168No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT12280.2792210006935049No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT9530.21669186780204414No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC8650.19668254527677667No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT7380.1678054548141748No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG6910.15711865755636148No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6430.14620448163348834No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATAT6140.13961050034675246No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5880.13369865505519618No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5830.13256176172989687No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGC5800.13187962573471732No Hit
ACGCACCAGACCCTGTTTCAGCACCTGGTCAATGCGCTCCT5070.11528098318534773No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC4960.1127798178696893No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA4860.11050603121909072No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT4860.11050603121909072No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG4850.11027865255403084No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTAT4730.10755010857331257No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG4460.10141088461669641No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)