FastQCFastQC Report
Sun 21 May 2023
EGAF00007941175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439795
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG43690.9934173876465171No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT31120.7076024056662763No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21390.48636296456303507No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT19200.43656703691492627No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC19040.4329289782739686No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG15390.3499357655271206No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC13920.31651110176332153No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT13440.3055969258404484No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC13220.30059459520913157No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12990.2953648859127548No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA11770.2676246887754522No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT9940.2260143930694983No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC7410.16848759080935438No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC7130.16212098818767837No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6480.14734137495878763No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6340.1441580736479496No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC6340.1441580736479496No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTACC6210.14120215100217146No Hit
GAAGCAACTATCAAAAAAGAACAGAAGCTGATC5060.11505360452028784No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5050.114826225855228No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5000.11368933252992872No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTGTG4970.11300719653474915No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT4890.1111881672142703No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG4760.10823224456849215No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC4750.10800486590343229No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC4520.10277515660705556No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)