FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450345
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13030.2893337330269016No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT11490.25513772774206445No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10480.2327104775227881No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9320.20695244756797565No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9060.20117909602637976No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT8940.1985144722379509No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG8040.17852979382473436No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7980.17719748193051993No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7600.16875950660049518No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7580.16831540263575703No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT7410.1645405189354828No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7090.15743485549967248No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG6670.1481086722401714No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6620.14699841232832606No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6180.13722812510408686No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT6170.13700607312171778No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG5660.12568142202089508No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5610.12457116210904973No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5510.12235064228535901No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5490.12190653832062086No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5460.12124038237351364No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG5120.11369061497296516No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG4860.10791726343136929No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG4750.1054746916253095No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG4620.10258801585451155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)