FastQCFastQC Report
Wed 31 May 2023
EGAF00007941177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450345
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT19010.422120818483607No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11120.24692180439440872No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT10300.22871354184014475No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10190.226270970034085No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9170.20362166783243957No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC8900.1976262643084746No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8350.18541340527817562No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7880.1749769621068292No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7770.17253439030076942No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7760.17231233831840034No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7500.16653898677680445No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC7150.1587671673938869No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG6930.1538820237817673No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6640.1474425162930642No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6610.14677636034595698No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6500.14433378853989717No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6350.14100300880436112No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG5710.12679168193274046No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5690.1263475779680023No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5670.12590347400326418No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC5650.12545937003852603No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5580.1239050061619425No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5390.11968601849693013No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC5340.11857575858508476No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5250.11657729074376312No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5170.11480087488481053No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC5020.11147009514927446No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA4800.10658495153715485No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC4780.10614084757241671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)