FastQCFastQC Report
Wed 31 May 2023
EGAF00007941178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437376
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12690.29013937664618084No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT10990.25127121744220077No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10200.23320895522388058No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9690.22154850746268656No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT9330.21331760316066728No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT8310.1899967076382792No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7690.17582126134035705No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7660.1751353526485221No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7490.1712485367281241No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG7430.1698767193444542No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT7370.16850490196078433No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6640.15181445712613403No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG6290.14381218905472637No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT6230.1424403716710565No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6190.1415258267486099No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5870.1342094673690372No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC5800.13260901375475562No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA5600.12803628914252269No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG5220.11934811237928009No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTG5020.11477538776704711No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC5020.11477538776704711No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4840.11065993561603746No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG4660.10654448346502779No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG4500.10288630377524144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)