FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437376
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20190.46161654960491666No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT18580.4248061164764413No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT10380.23732440737489024No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC10330.236181226221832No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT10110.23115122914837577No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG9070.20737306116476442No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC8250.1886248902546093No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8010.18313762071992976No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7770.17765035118525022No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT7740.17696444249341528No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7700.17604989757096867No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7370.16850490196078433No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG6760.1545580918934738No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6630.1515858208955224No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6450.14747036874451272No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC6090.1392394644424934No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6080.13901082821188177No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6050.13832491952004683No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6030.13786764705882354No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5950.13603855721393035No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG5490.12552129060579456No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT5410.12369220076090137No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC5270.1204912935323383No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5260.12026265730172667No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5180.11843356745683349No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTAAC5100.11660447761194029No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC4700.10745902838747438No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA4600.10517266608135792No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC4580.10471539362013461No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG4550.10402948492829968No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC4440.10151448639157155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)