FastQCFastQC Report
Wed 31 May 2023
EGAF00007941180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451390
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10220.22641175037107603No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9600.21267639956578568No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7900.17501495380934448No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6670.14776579011497817No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6630.14687963845012075No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6600.14621502470147765No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6580.14577194886904896No Hit
GTCCTGATCTTTCTTCGGTGGGATTGCCATGAAGCTCAGGT6190.1371319701366889No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6050.13403043930968783No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5180.11475664059903852No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4960.10988280644232261No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4930.10921819269367951No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT4520.10013513812889074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)