FastQCFastQC Report
Wed 31 May 2023
EGAF00007941182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437803
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8770.20031840805110976No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8700.1987195153984783No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8270.1888977462465995No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8170.18661361388569744No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7720.17633501826163822No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7450.17016786088720268No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7190.16422911674885737No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6840.15623465348570018No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6430.14686971080600178No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6410.14641288433382138No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6340.14481399168118994No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6250.14275827255637807No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5890.13453539605713072No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5530.12631251955788333No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5490.12539886661352254No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5200.11877488276690659No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG5040.11512027098946329No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG4760.10872470037893757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)