FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007941183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437803
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18040.41205747790672975No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15810.36112132625861404No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12720.2905416363067407No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9320.212881136036071No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8730.1994047551067489No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8580.19597855656539584No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG7760.17724867120599905No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7680.1754213653172774No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7600.17359405942855577No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC7040.1608029182075043No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6370.14549923138946055No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6120.13978890048720544No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6050.138190007834574No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5700.13019554457141683No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5530.12631251955788333No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC5330.12174425483607923No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5220.11923170923908699No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5220.11923170923908699No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5020.11466344451728289No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4900.11192248568420043No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC4820.1100951797954788No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC4680.1068973944902159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)