FastQCFastQC Report
Sun 21 May 2023
EGAF00007941184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522403
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15550.29766291541204776No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9400.1799377109243247No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG8870.16979228679774044No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8000.153138477382404No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7920.15160709260857996No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTAT7750.1483528999642039No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7570.14490728422309979No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACC7470.14299305325581974No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7200.13782462964416362No Hit
ACGCACCAGACCCTGTTTCAGCACCTGGTCAATGCGCTCCT6240.11944801235827512No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6200.11868231997136311No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6110.11695951210081107No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6000.11485385803680301No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCT5790.1108339730055149No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC5320.10183708745929866No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5240.10030570268547462No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5230.10011427958874662No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5230.10011427958874662No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)