FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences589795
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13700.2322840987122644No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13500.22889308997193938No Hit
GACGGTCTGGATAGCCGCGTCTACGGTGGACACCGGCGGCGGGG13070.2216024211802406No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12530.21244669758136303No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12070.20464737747861544No Hit
AACAGTCTGAATTGCCGCATCCACAGTGGAAACCGGCGGTGGGG10820.18345357285158403No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10570.17921481192617775No Hit
CACAGTCTGAATTGCTGCATCAACAGTGGATACCGGCGGCGGCG9070.15378224637374005No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8140.13801405573122866No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7730.13106248781356236No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7610.12902788256936734No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7490.12699327732517232No Hit
CGGCAGACGGGCGGTGGTCTGACGGAACACGTTGTCATCAGTTT7380.12512822251799355No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7200.122076314651701No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7170.12156766334065225No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6750.11444654498596969No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6710.11376834323790469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)