FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941189

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941189
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences589795
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31610.5359489314083707No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20720.35130850549767295No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15830.268398341796726No Hit
CGTGTTCGTGGCCACTATCGTGCGCCATGGG14000.23737061182275196No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13830.2344882543934757No Hit
CGTGTTCGTGGTCACTACCGTGCTCCGTGGG12230.20736018447087548No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10440.17701065624496648No Hit
CGTGTCCGTGGCCACTACCGTGCCCCATGGG9970.16904178570520267No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8950.15174764112954503No Hit
ATCGAGAAATATGACCTGGTGGCTGTTCCGG7990.1354707991759849No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7920.13428394611687114No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7820.1325884417467086No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7550.12801057994726983No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7420.12580642426605856No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7370.1249586720809773No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7310.12394136945887979No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6900.11698980154121347No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6880.11665070066718096No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6760.11461609542298594No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5910.10020430827660458No Hit

[OK]Adapter Content

Adapter graph