FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007941193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences587680
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21070.3585284508576096No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19060.3243261638987204No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15560.2647699428260278No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8850.1505921589980942No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8800.14974135583991288No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8160.13885107541519195No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7450.12676967056901714No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7380.1255785461475633No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6890.11724067519738633No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6330.1077116798257555No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6300.1072011979308467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)