FastQCFastQC Report
Wed 31 May 2023
EGAF00007941207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences556549
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA47780.8585048216778756No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27460.49339770622173434No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23800.4276353025519765No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22120.39744928119536643No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19060.34246759943868377No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17370.3121018993835224No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14730.26466672296599225No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11960.21489572346729577No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10900.1958497814208632No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10790.19387331573679945No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8360.15021139198884556No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC7390.13278255822937424No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6860.12325958720615796No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6660.11966601323513293No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6570.11804890494817168No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6430.11553340316845417No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6330.11373661618294167No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6320.11355693748439041No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6110.10978368481481415No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6060.1088852913220579No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5890.10583075344668663No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5810.10439332385827663No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5780.10385428776262288No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5760.10349493036552038No Hit
GGTCACCACTATGACGGCGTTGCCATGCAGT5710.10259653687276413No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5610.10079974988725163No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)