FastQCFastQC Report
Sun 21 May 2023
EGAF00007941209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539428
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA36030.667929732976412No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30290.5615207219499173No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19510.3616794085586955No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16090.298278917668345No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13310.2467428461258963No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12690.2352491898826164No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11710.2170817977561417No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11070.20521737840823984No Hit
ACCTACCTGACGCAGGTACCGCCGGAACGTG10000.18538155231096642No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8970.16628725242293688No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8510.15775970101663245No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8320.15423745152272406No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7860.14570990011641963No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7830.14515375545948672No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7690.14255841372713318No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7270.1347723885300726No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5880.10900435275884826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)