FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442885
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23020.5197737561669508No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8370.18898811203811372No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7560.17069893990539303No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7420.16753784842566355No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5580.12599207469207582No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4870.10996082504487621No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4760.10747711031080304No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4720.10657394131659459No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4500.10160651184844824No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)