FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529406
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20240.3823152740996513No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19540.3690929079005527No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18390.3473704491448907No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17650.33339251916298646No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16720.3158256612127554No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15950.30128105839374697No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12990.24536933846612996No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12580.2376248096923722No Hit
GCGAGAGGTCGCAGATTTGTACGGGTGCAGGGTATCGGTACGAG11860.2240246616018708No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10070.1902131823213186No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9850.1860575815158876No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9840.1858686905701862No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9680.18284643543896367No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT9680.18284643543896367No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9560.18057974409054675No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9510.17963528936203974No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9000.17000185113126787No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT8730.16490179559732984No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT8280.15640170304076645No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8050.15205721128963404No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7380.13940151792763966No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7030.13279033482809036No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6930.13090142537107624No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6760.1276902792941523No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6380.12051242335749879No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6300.11900129579188751No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6240.11786795011767906No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5810.10974563945251847No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5790.10936785756111567No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5630.10634560242989313No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5380.1016233287873579No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5370.1014344378416565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)