FastQCFastQC Report
Wed 31 May 2023
EGAF00007941221

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941221
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529406
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47940.9055431936925534No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27890.526816847561229No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19190.3624817248010034No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18560.35058159522181465No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18180.3434037392851611No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17400.32867024552045127No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16270.30732556865619204No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14760.2788030358552793No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13960.2636917601991666No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12500.23611368212676093No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11950.22572468011318345No Hit
ATCGGCTCCCTGGCTGGTGCAATTGGCGGTA11650.22005795174214118No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10860.2051355670317299No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT10310.19474656501815243No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10070.1902131823213186No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10000.18889094570140874No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9830.1856797996244848No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9660.18246865354756087No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG9280.17529079761090732No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9060.17113519680547634No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA8580.1620684314118087No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8130.15356833885524532No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7430.1403459726561467No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7370.13921262698193823No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7030.13279033482809036No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6950.13127920726247908No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6750.1275013883484509No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6240.11786795011767906No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5780.10917896661541426No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5750.10861229377831003No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5530.10445669297287903No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5300.10011220122174663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)