FastQCFastQC Report
Sun 21 May 2023
EGAF00007941223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542557
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG87281.6086789037833813No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45790.8439666247048697No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23490.43294990203794254No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16810.3098291976695536No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13200.2432924098297506No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13190.2431080973980614No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11580.2134337958960994No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10890.20071623810954423No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10310.19002611707157036No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10170.1874457430279215No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5570.1026620244508872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)