FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462938
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27490.5938160185597208No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9710.2097473095749323No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8950.19333042437648237No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8510.18382591189316927No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7880.1702171781102437No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5410.11686230121528153No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5340.11535021968384536No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4930.10649374214257634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)