FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007941230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007941230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435905
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11010.2525779699705211No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8900.20417292758743302No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8540.1959142473704133No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6880.15783255525859993No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4900.11240981406499123No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4380.1004806093070738No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)